I dont think there is a difference in the adaptor plate, I believe they are the same.
as for bell housing bolts use the auto ones.
ditto on getting a solid flywheel conversion, all the bolts will be there for that. just remember to take the spacer off of the end of the crank, auto uses it, 5 spped dont.
transfer case will bolt right up.
the cross member should be the same
and driveshafts should also remain the same.
dont forget the pedal assembly, the master and slave cylinder,
plug is already on the firewall for the clutch start switch, but ya need the switch
also need new cpu or have jody at dp tuner
steering column can be redone from auto to standard.
and dont forget the plate for the floor, ya either need a standard one, or cut the old one out.